Why do research in the Philippines?

Because installing grid computing middleware can get you to this:

7th PANDA Grid Workshop, Bohol, Philippines, May 4 - 8, 2009
organised by
Ateneo de Manila University
Sponsored also by EPSRC, IoP, PPARC and the Royal Society of Edinburgh
The aim of the workshop is to bring together grid administrators and software developers in an informal setting, involving open discussions. The focus will include grid maintenance and monitoring and data production with PandaRoot.

Organising committee:

    Rafael P. Saldana (Ateneo)
    Kilian Schwarz (GSI)
    Dan Protopopescu (Glasgow)

Contact person:

Address:

    Holy Name University,
    Lesage and Gallares Streets,
    6300 Tagbilaran City,
    Bohol, Philippines

Let’s look at the itinerary:

Tagbilaran City (May 3, 4, 5)

Metro Centre Hotel and Convention Center
Pres. Carlos P. Garcia Avenue
Tagbilaran City, Bohol
Philippines, 6300
Website: www.metrocentrehotel.com

Panglao Island (May 6, 7, 8, 9, 10)

Bohol Beach Club
Bo. Bolod, Panglao Island, Bohol 6340
Website: www.boholbeachclub.com.ph

Shet, gusto kong umuwi!!!

Blog Traffic Exchange Related Posts
  • 6 driver hotswap bayBuilding a 1.2 Terabyte server At last after several months of processing paperwork through the Purchasing Office, our 1.2 terabyte Beowulf cluster server has finally arrived! This will be used to replace our recently decommissioned Beowulf cluster deployed last 2001. It will serve the scientific community of Ateneo de Manila for various numerically intensive......
  • Life: the next phase The past few weeks was very tight as I preparing from my resignation as an instructor in Ateneo (and attending parties). I will be joining the Computer Science Department at the University of Chicago for my graduate studies. My work will be on grid computing and distributed computing under the......
  • 6 driver hotswap bayBuilding a 1.2 Terabyte server At last after several months of processing paperwork through the Purchasing Office, our 1.2 terabyte Beowulf cluster server has finally arrived! This will be used to replace our recently decommissioned Beowulf cluster deployed last 2001. It will serve the scientific community of Ateneo de Manila for various numerically intensive......
  • Adding git-svn support from source Having workstations where you don't have root access either means contacting support for installation or building your own software from source to get the latest version. I started using git for code produced in my work. The build was successful with a simple "./configure; make ; make install" series of......
  • Chicago Startup Factory The event is a collaboration between the GSB and CS Department. The group hopes to create technology-heavy startups and businesses unlike when you gather a bunch of pure business people who can't make a business plan other than canned food, a network of juice/ shake stands, etc. The speaker for......
Blog Traffic Exchange Related Websites
  • Another Buy: Citi Wants a Piece of Wachovia's Badonkadonk Remember yesterday when I talked about Wachovia remembering my original post about them hunkering down?  Looks like they hunkered a bit too far.  To the template! What Happened? Amid the fallout of the WaMu failure and takeover, rumors about a Wachovia failure came to the front.  The funny thing......
  • nycBig City Living and Country Garden Landscaping Everyone can benefit from the beauty and serenity that a country garden offers, but people who live in big cities may have difficulty finding the space that they need to create a country garden landscaping endeavor. Living in a big city like New York City does not mean that......
  • How Does Spyware and Adware Get on Your Computer? Spyware and adware use some very stealth tactics to get onto your computer. While most experienced internet users are quite diligent, the average users are completely oblivious to the impact and magnitude of adware and spyware. Most people seem to think that constant pop ups are just a part of......
  • Write Portable Code How many times do programmers have to port software written to run on one particular architecture into another (or more than one) architecture? Does it always go smoothly? If you answered ?yes?, you might not need this book. But if your answer was ?no?, then this book is for you.......
  • 5 reasons to avoid iPhone 3G FSF Community Blogs - The 5 real reasons to avoid iPhone 3G: iPhone completely blocks free software. Developers must pay a tax to Apple, who becomes the sole authority over what can and can't be on everyone's phones. iPhone endorses and supports Digital Restrictions Management (DRM) technology. iPhone exposes your......

Adding git-svn support from source

Having workstations where you don’t have root access either means contacting support for installation or building your own software from source to get the latest version.

I started using git for code produced in my work. The build was successful with a simple “./configure; make ; make install” series of steps except for supporting access to subversion repositories. It was looking for the perl module SVN::Core to be able to function successfully. Googling about it will land you to the Alien::SVN CPAN module page. Its dependencies can be installed with the standard “install Module::Name” invocation in the CPAN shell. But the main package does not properly install in this environment. It is probably because of the tarball not containing the standard Makefile.PL. It has Build.PL instead. This script generates the Build that compiles the subversion library and its bindings. Then it generates a Makefile from Makefile.PL in the src/subversion/subversion/bindings/swig/perl/native directory. Below is the output of the script:

[Alien-SVN-1.4.6.0]$ ./Build
Running make
Running make swig-pl-lib
make: Nothing to be done for `swig-pl-lib'.
Running /usr/bin/perl Makefile.PL INSTALLDIRS=site
Writing Makefile for SVN::_Core
Writing Makefile.client for SVN::_Client
Writing Makefile.delta for SVN::_Delta
Writing Makefile.fs for SVN::_Fs
Writing Makefile.ra for SVN::_Ra
Writing Makefile.repos for SVN::_Repos
Writing Makefile.wc for SVN::_Wc
Running make
gcc -c  -I/home/aespinosa/local/include/apr-0
...

The command /usr/bin/perl Makefile.PL INSTALLDIRS=site generates a build environment to install in /usr. This is not favorable for installation in userspace since you do not have permission to write on that directory. So this command will be rerun /usr/bin/perl Makefile.PL PREFIX=$USERDIR, where $USERDIR is the destination directory you want to.

Now you can successfully clone subversion repositories!

Blog Traffic Exchange Related Posts
  • wipas: site view 1WIPAS propagation studies Classes have been suspended for three consecutive days due to heavy rain. At last I can slack off preparing for class and concentrate on the other side of academic work: research. The ECCE Department is very interested in studying its properties in the context of Philippine tropical rain. We have......
  • wipas: site view 1WIPAS propagation studies Classes have been suspended for three consecutive days due to heavy rain. At last I can slack off preparing for class and concentrate on the other side of academic work: research. The ECCE Department is very interested in studying its properties in the context of Philippine tropical rain. We have......
  • links for 2007-11-07 academhack Blog about technology based tools for academics. It is targetted for the humanities (tags: academic research blog education geek hacks technology productivity) Academic Productivity ACADEMIC PRODUCTIVITY is a survival guide for the 21st century researcher. Written by a small team of academics focusing on the topics on knowledge......
  • 6 driver hotswap bayBuilding a 1.2 Terabyte server At last after several months of processing paperwork through the Purchasing Office, our 1.2 terabyte Beowulf cluster server has finally arrived! This will be used to replace our recently decommissioned Beowulf cluster deployed last 2001. It will serve the scientific community of Ateneo de Manila for various numerically intensive......
  • blog pag backgroundWeb2.0-generated wallpapers [caption id="" align="aligncenter" width="450" caption="Blog page background header"][/caption] I decided to create a backround header image for my blog and Multiply page. Tons of randomly writter equations would be nice to have. The Yahoo Image search allows you to specify if you the types of pictures you want like black......
Blog Traffic Exchange Related Websites
  • Are You Codependent? Quick Quiz Reveals Codependency Any relationship involves a certain degree of [tag-tec]codependency[/tag-tec]. Here is a quiz designed to find out if you are codependent to a problematic degree. The terms enabler and codependent arise when speaking of the partner involved in a relationship with an addicted person, but the addict may also be codependent.......
  • Applying For COBRA Health Insurance Yesterday I gave a brief overview of COBRA continuation coverage.  Today, I'll cover how to go about applying for it. When separated from your former employer, you should receive a special COBRA election form along with all your other separation paperwork.  If you didn't, call HR immediately.  This form will......
  • Buying Guide to Dobros - Wooden Resonator Guitars Consult different buying guides for buying a Dobro, and you will find yourself getting different opinions from different people. Dobros are wooden body resonator guitars, which are a unique piece of musical history and an intriguing instrument for you to play. These Dobros do not have to be expensive, as......
  • shattered_hard_driveBe Prepared, Backup Your Data For most people these days our computers are our lifelines, our stories, our history. It used to be that people would record their photos in albums bound and put on a shelf. We would maintain our check registers, in the actual register. We kept track of our accounts and our......
  • The Bug Desk [caption id="" align="alignleft" width="300" caption="The Bug Desk"][/caption] About the Bug Desk An excellent choice for a computer workstation the Bug Desk's main surface has plenty of room for a monitor while a pull-out tray keeps your keyboard handy. Two smaller shelves above can hold speakers or framed photographs. Keep books......

On science productivity

Grid computing infrastructures were made to support execution of science applications at larger scales. One challenge today in running your science in these behemoth systems the requirement of “griddification” or “supercomputerification”. You need to know how to make the best of your hardware or grid sites in order to orchestrate beautiful workflows and process your science. So a lot of research has been done to create languages such as Swift to make life easier for these domain scientists.

I was debugging a science application for the last several months to run on petascale (100×10^3++ processors) systems. The main goal of the domain scientist was to process hundres of thousands data sequences. I got too much carried away in the debugging to make the application work and have only looked at 3000 of the set In other words, not much *real* work has been done.

Now I should always remember when debugging, remember the scientists who took pain in measuring this data or who can’t get data. (Much like an analogy of “finish your food because there are millions of children hungry in developing countries”).

Blog Traffic Exchange Related Posts
  • Ubiquity weather command Ubiquity from Mozilla labs features a nice command for querying the weather. It creates a query to the Google Weather service and returns the result. But with Google's location/ IP dependent search results you can get the weather information in various languages depending where you conduct the search. For example......
  • Gutsy workstationUpgrading to Gutsy Gibbon A few weeks ago, I decided to upgrade my desktops from Ubuntu 7.04 Feisty Fawn to 7.10 Gutsy Gibbon. Using the upgrade instructions from the Ubuntu website, I used the network upgrade method for Ubuntu servers. I did not want to use the update-manager application to manage the upgrade because......
  • links for 2007-12-15 Twitter: Is Brevity The Next Big Thing? | Newsweek Voices - Steven Levy | Newsweek.com (tags: twitter socialnetworking) Friends Swap Twitters, and Frustration - WSJ.com (tags: twitter socialnetworking) Blog on Wiki Patterns » Blog Archive » Do you spend too much time in meetings and answering email? (tags: wiki......
  • Realtek 8111B GE on Rocks 4.3 I am currently building a new Beowulf cluster using Rocks 4.3. It uses the linux kernel version 2.6.9-55EL. After building the master node, it is time to install on the compute nodes. In normal conditions where everything is smooth, the Rocks kickstart system boots the compute nodes from the network......
  • GRID Computing Now! - Competition 2008 From GRID Computing Now! - Competition 2008. Too bad it's only open for UK residents :( Enter the Grid Computing Now! Competition 2008 Grid Computing Now! is pleased to announce its second competition for applying innovative grid computing solutions to an environmental problem. The competition is supported by the British Computer Society, The 451 Group,......
Blog Traffic Exchange Related Websites
  • World Bank urges increased funding for Clean Energy projects The World Bank is stating that developing countries will invest some $300 billion each year for the next 25 years to meet their clean energy needs. They want to develop some new types of loans and grants that would help these developing countries make their power generations cleaner and more......
  • IMG_0018Why do we pay taxes? - Ammanie pavements Everyone pays taxes in one form or another- mostly income and sales taxes. But why do we pay these taxes? Well, it might be because the government can’t afford to manage service effectively without getting more money which is very understandable for a developing country with very limited natural resources,......
  • Weekly Roundup - My Favorite Personal Finance Posts Well, this past week was a long one for me. I was at a conference for work and I didn't have much spare time at all. I had a lot of reading to do when I returned, and I'd like to share a few of the great personal finance articles......
  • Eat Smart's Nutrition and Digital Food Scale This is not a paid review, just an in-depth look at a product Israel and I are interested in buying. He was able to email the Vice President and secure FMU readers an 11% discount off the $75 Nutrition Scale price. Simply enter the code "UNLEASHED" when you check out.......
  • Nitro Quattro Review As one of the relative few who have had a chance to put the Nitro Quattro program in place for our line of products, I'm one of the only people who can really give an insider's view on the product. I've told the guys at Nitro how impressed I've been......

Chicago Startup Factory

The event is a collaboration between the GSB and CS Department. The group hopes to create technology-heavy startups and businesses unlike when you gather a bunch of pure business people who can’t make a business plan other than canned food, a network of juice/ shake stands, etc. The speaker for the Startup Factory talk was Adarsh Arora, CEO of Athena Security and Co-Founder of Lisle Technology Partners. I took some of his striking ideas about innovating and generating business plans around technology:

  • never sell more than one innovation - his rationale for this was that the market cannot catch-up with all of your ideas. I have not thought of this deeply because [1] I have yet to have a really brilliant idea, and [2] most busines models I saw are too caught up in selling this one unique idea that they don’t bother to look at the other types (probably they are bad ideas in the first place).
  • interdisciplinary collaboration - now this is more familiar to my school of thought. As what we always say in the Ateneo Innovation Center, today’s problems are so complex that you need to apply every type of paradigm to be able to attack the problem from different angles and come up with a brilliant solution.

Adarsh also discussed four types of companies [1] wishful thinking (you have enough deep connections to get angel funding), [2] historical precedence - selling technology to improve a process, [3] intuitive jump - pure luck; with democratization of technology, YouTube and Ebay became a big thing even though video sharing and online auctions were almost non-existent web services during their time, and [4] sure technology - you know that there is a need for it in the future (e.g. Y2K “bug”).

Follow-up events to this is an Entrepenuerial Brainstorming Session with GSB and CS students and an Introduction to creating application on the iPhone. Apple’s development platform makes it so easy for anyone to distribute an app and sell it over iTunes (or AppleStore?) enabling you to earn several thousand dollars in a few months.

Oh, and they had free pizza during the talk :)

Blog Traffic Exchange Related Posts
  • Deriving Equations for School Administration One monday, I represented the student body in lieu of Charles, the COA president. The agenda was about MVP rules and guidelines. An issue was raised about the noised levels. As the science major and head of the science guild, I thought that the rule of benchmarking permits with a......
  • Midwest Grid School 2008 @UChicago Yey! Malapit na malapit lang :) More information about the program and registration information is found in its OSG Page. Workshop dates from Sept 17-19. The Open Science Grid (OSG), the TeraGrid and the Computation Institute of The University of Chicago present a three day intensive course in grid computing......
  • Spreadsheet-powered Election Quickcount Last Monday (May 14), millions of Filipinos went to various public schools (precints) to exercise their right of suffrage.  It was election time for local officials like mayors, councilors, board members, governors and also senators.  Since the mid 80's the National Movement for Free Elections (Namfrel) conducts parallel quickcounts.  It......
  • Lecture notes on iteration For my CE 21 class. The problem discussed earlier was, draw a triangle of stars given the length for a side of the triangle n. It can be illustrated as follows for n = 3. * * * * * * The next task is to center the triangle: *......
  • LEGO Brick's 50th anniversay! I was in the department this morning when something caught my attention: one of the workstations display the Google webpage.  Their logo was made up of LEGO bricks!  Later on, Slashdot posted the article about the 50th Anniversary of the LEGO brick.  So that was the occassion.  LEGO made......
Blog Traffic Exchange Related Websites
  • Rebates – Are They Worth the Hassle? Rebates offers are often used to make purchasing a particular item more attractive. You’ve seen these types of offers, right? Maybe you’re shopping for tires for your car and see an advertisement listing them for $90. Then you notice the little asterisk next to the price. Tiny letters declare that......
  • Learn More Hints About Reasons of Aging and Protecting Your Health Aging, aging, aging - people talk about this problem, lots of solutions offered and still most of the highly developed countries, like USA, suffer from longevity deficit.Any solution or clue?It seems to be pointless to try fight aging. Well, you cannot reach immortality of your body, but this very body......
  • box-medium.jpgTUBEINATOR - Is This A YouTube Traffic Machine? Michelle MacPhearson is one of those rare Web 2.0 marketing innovators in a world where everyone seems to prefer doing the "me too" thing.You might know her name from BadderAdder fame. That was the Myspace friend adder program that was snatched up by thousands of marketers and Myspace members who......
  • Personal savings rate vs GDPThe Case For And Against Keynes And Spending John Maynard Keynes was and remains the most controversial economist of the short existence (relative) of the dismal science, economics.  So powerful influential was he, that an entire school of thought is named after him, Keynesian Economics.  Keynesian economics promotes a number of ideas I disagree with, most notably, and......
  • ReligiousInterfaith Dialogue: Religious Pluralism & Conflict Resolution siavosh asked: Is there any clear and applied theory of pluralism at all?Studying different perceptions regarding the concept of pluralism in general and religious pluralism in particular reveal the undesirable fact that such theories and views are not applicable enough as far as the co existence of different cultures and......

Great Chicago Book Sale

I quickly grabbed my bike after coming from a seminar class and arrived 10 minutes before the closing time! Within a short span of time and by relying on my semi-rare impulsiveness of buying, I got these two titles foer 5 USD (buy-one-take-one):

W. T. Welford, Useful Optics (Chicago Lectures in Physics). University Of Chicago Press, October 1991.

Students and professionals alike have long felt the need of a modern source of practical advice on the use of optical tools in scientific research. Walter T. Welford’s _Useful Optics_ meets this need. Welford offers a succinct review of principles basic to the construction and use of optics in physics. His lucid explanations and clear illustrations will particularly help those whose interests lie in other areas but who nevertheless must understand enough about optics to create the experimental apparatus necessary to their research. Consistently emphasizing applications and practical points of design, Welford covers a host of topics: mirrors and prisms, optical materials, aberration, the limits of image formation and resolution, illumination for image-forming systems, laser beams, interference and interferometry, detectors and light sources, holography, and more. The final chapter deals with putting together an experimental optics system. Many areas of the physical sciences and engineering increasingly demand an appreciation of optics. Welford’s _Useful Optics_ will prove indispensable to any researcher trying to develop and use effective optical apparatus. Walter T. Welford (1916-1990) was professor of physics at Imperial College of Science, Technology and Medicine from 1951 until his death. He was a Fellow of the Royal Society and of the Optical Society of America.  Link to [Amazon.com]

T. P. Hughes, Human-Built World: How to Think about Technology and Culture (science * culture).    University Of Chicago Press, May 2005.

To most people, technology has been reduced to computers, consumer goods, and military weapons; we speak of “technological progress” in terms of RAM and CD-ROMs and the flatness of our television screens. In Human-Built World, thankfully, Thomas Hughes restores to technology the conceptual richness and depth it deserves by chronicling the ideas about technology expressed by influential Western thinkers who not only understood its multifaceted character but who also explored its creative potential.

Hughes draws on an enormous range of literature, art, and architecture to explore what technology has brought to society and culture, and to explain how we might begin to develop an “ecotechnology” that works with, not against, ecological systems. From the “Creator” model of development of the sixteenth century to the “big science” of the 1940s and 1950s to the architecture of Frank Gehry, Hughes nimbly charts the myriad ways that technology has been woven into the social and cultural fabric of different eras and the promises and problems it has offered. Thomas Jefferson, for instance, optimistically hoped that technology could be combined with nature to create an Edenic environment; Lewis Mumford, two centuries later, warned of the increasing mechanization of American life.

Such divergent views, Hughes shows, have existed side by side, demonstrating the fundamental idea that “in its variety, technology is full of contradictions, laden with human folly, saved by occasional benign deeds, and rich with unintended consequences.” In Human-Built World, he offers the highly engaging history of these contradictions, follies, and consequences, a history that resurrects technology, rightfully, as more than gadgetry; it is in fact no less than an embodiment of human values. Link to [Amazon.com]

Even information can be found in the UChicago Press site.

Blog Traffic Exchange Related Posts
  • sticker_sealChanging Rubik's Cube sticker labels It is an established fact the the sticker labels of rubik's cubes deteriorate fast. For less than a year of using my newly ordered 3x3 cube from http://www.rubiks.com, 4 out of 6 faces were discolored. The "protective" plastic coating of the cube has a greater bonding strength with the colors......
  • ICT4Health2008: Session on Medical Imaging, Instrumentation and Informatics I will be facilitating/ moderating the second session of the International Symposium on ICT for Health. It will feature paper presentations on Medical Imaging, Instrumentation and Informatics. Below is the schedule of presentations and their titles: 3:15pm - 3:45pm : J. Liu, J.H. Lim, D. Racoceanu, W.W.K. Damon and H.......
  • Site reorganization I have decided to separate my personal (actually it's more technical and highly niched) blog to my academic pages. The following are the other pages that I maintain:Course pages-separating the course page into a more structured manner and editing with low level access allows me more flexibility in terms of......
  • GRID Computing Now! - Competition 2008 From GRID Computing Now! - Competition 2008. Too bad it's only open for UK residents :( Enter the Grid Computing Now! Competition 2008 Grid Computing Now! is pleased to announce its second competition for applying innovative grid computing solutions to an environmental problem. The competition is supported by the British Computer Society, The 451 Group,......
  • AJSS: CodeInvaders! During the 2006 ACM-ICPC World Finals in San Antonio, Texas, there is an intermediate programming contest sponsored by IBM.  The Java Challenge showcases the latest offerings from IBM and try it out in a tournament style.  The name of the tournament was CodeInvaders.  It was released in the IBM AlphaWorks......
Blog Traffic Exchange Related Websites
  • The Identity of The Antichrist and Final Super Power Even though the fascination with the identity of the Antichrist has been a major aspect of bible prophecy for hundreds of years, the twentieth  and twenty first century has witnessed more focus on the end time Antichrist debate more than any other time primarily because the rise of the internet......
  • Take care of your teeth AND your wallet Dental expenses can be pretty minimal for years. A cleaning here, a filling there. Then, if you get hit with a crown and/or a root canal, it can run over $1,000 per tooth! Ouch! That hurts more than the dentist's drill for me! One set of visits to my dentist......
  • The Most Important Election In Our History; Not Really   Photo courtesy of dcJohn In one week our country's citizens will exercise their right to vote and elect someone President of the United States of America.  It's been called the most important job in the world.  Millions of dollars have been spent advertising each candidate's position, and attacking the......
  • Fish for Dinner: What Kind of Fish Are Great for Catching and Eating? [caption id="attachment_193" align="alignleft" width="240" caption="Walleye: It's what's for dinner."][/caption]There's nothing quite like a meal freshly picked from the lake and the satisfaction of knowing that you went out and caught your own dinner. Kids love to do it, and it's a great way for parents to bond with their children.......
  • harpHarps Throughout History Harps are a musical instrument that is played all throughout a great deal of the world. Consider the fact that in Africa alone there are more than one hundred and fifty different distinct traditions involving the harp. The harp's ancestor is suggested to be a hunting bow, but the history......